Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_431[S] COG3117 Uncharacterized protein conserved in bacteria. (188 aa)    
Predicted Functional Partners:
KB13_466
ABC transporter, ATPase subunit; [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
  
 0.998
yhbN
Cell envelope biogenesis protein YhbN; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.993
KB13_360
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
 
 0.912
KB13_948
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
  
 
 0.907
KB13_1277
Arabinose 5-phosphate isomerase; [R] COG0517 FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.827
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.809
raiA
Ribosomal subunit interface protein; [J] COG1544 Ribosome-associated protein Y (PSrp-1).
       0.791
KB13_1158
Conserved hypothetical protein; Displays ATPase and GTPase activities.
       0.791
KB13_593
[G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
       0.791
tolA
Protein TolA; [M] COG3064 Membrane protein involved in colicin uptake.
  
     0.684
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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