Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppx[FP] COG0248 Exopolyphosphatase. (531 aa)    
Predicted Functional Partners:
spoT
Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
 
 0.931
KB13_1235
PvdS; [S] COG2326 Uncharacterized conserved protein.
 
  
 0.610
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
     
 0.475
gltB
Glutamate synthase, large subunit; [E] COG0070 Glutamate synthase domain 3.
     
 0.452
purM
Phosphoribosylformylglycinamidine cyclo-ligase; [O] COG0071 Molecular chaperone (small heat shock protein).
      0.414
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
 0.403
pstA
[P] COG0573 ABC-type phosphate transport system, permease component.
     
 0.403
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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