Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_514ATPase, AAA family; [R] COG0714 MoxR-like ATPases. (338 aa)    
Predicted Functional Partners:
KB13_322
Von Willebrand factor, type A; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
 
 0.959
KB13_1000
[R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
  
 0.953
KB13_1076
Von Willebrand factor, type A.
 
 
  0.949
KB13_1182
Conserved hypothetical protein.
       0.781
KB13_132
Conserved hypothetical protein.
       0.781
KB13_105
Glycine cleavage T protein; [R] COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.
       0.773
KB13_964
Putative Cytochrome c subfamily protein.
  
     0.754
KB13_377
Cytochrome c, class I.
  
     0.753
KB13_696
MxaD.
 
     0.717
KB13_119
Transglutaminase-like superfamily protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
   
 0.695
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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