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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_579Carbamoyltransferase; [O] COG2192 Predicted carbamoyl transferase, NodU family. (574 aa)    
Predicted Functional Partners:
KB13_1190
Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.941
KB13_553
Conserved hypothetical protein; [RTKL] COG0515 Serine/threonine protein kinase.
       0.792
KB13_1260
Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.
  
     0.747
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.746
eda
[G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
       0.716
rfaC
Lipopolysaccharide heptosyltransferase I; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
 
     0.636
KB13_724
Glycosyl transferase, group 1 family protein.
       0.618
KB13_1140
Sulfatase; [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.438
rfaF
Lipopolysaccharide heptosyltransferase II; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
 
    0.422
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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