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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_593[G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA. (126 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.820
KB13_1277
Arabinose 5-phosphate isomerase; [R] COG0517 FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.817
KB13_949
ROK family protein; [KG] COG1940 Transcriptional regulator/sugar kinase.
     
 0.814
raiA
Ribosomal subunit interface protein; [J] COG1544 Ribosome-associated protein Y (PSrp-1).
     
 0.805
algC
[G] COG1109 Phosphomannomutase.
     
  0.797
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
  0.797
KB13_1158
Conserved hypothetical protein; Displays ATPase and GTPase activities.
       0.792
KB13_431
[S] COG3117 Uncharacterized protein conserved in bacteria.
       0.791
KB13_466
ABC transporter, ATPase subunit; [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
       0.791
yhbN
Cell envelope biogenesis protein YhbN; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
       0.791
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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