Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KB13_604Radical SAM domain protein; [C] COG0731 Fe-S oxidoreductases. (282 aa)    
Predicted Functional Partners:
KB13_389
Acetate permease; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.671
KB13_65
Conserved hypothetical protein; [S] COG3162 Predicted membrane protein.
       0.671
KB13_1221
Sucrose phosphorylase; [G] COG0366 Glycosidases.
       0.631
mpgSP
Mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase; [R] COG0561 Predicted hydrolases of the HAD superfamily.
       0.631
KB13_966
[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.631
KB13_544
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.624
KB13_842
[C] COG3038 Cytochrome B561.
       0.544
KB13_20
[O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase.
   
    0.449
KB13_1008
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.411
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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