STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
KB13_625Peptidase M23B; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (395 aa)    
Predicted Functional Partners:
KB13_511
Conserved hypothetical protein, putative; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 
 0.967
amiC
N-acetylmuramoyl-l-alanine amidase, amic protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
   0.912
ftsE
Cell division ATP-binding protein FtsE, ABC transporter ATP-binding protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 
 0.910
KB13_207
[T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
     
  0.799
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.791
KB13_498
Peptidase M48, Ste24p; [R] COG4783 Putative Zn-dependent protease, contains TPR repeats.
  
 
   0.655
prc
Carboxy-terminal processing protease; [M] COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
 
  
 0.601
grxC
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.580
KB13_1061
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative; [R] COG0457 FOG: TPR repeat.
   
   0.544
mrcA
MrcA penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
     0.527
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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