Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KB13_634Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (266 aa)    
Predicted Functional Partners:
KB13_1267
[E] COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
       0.698
KB13_7
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.684
amt
Ammonium transporter; [P] COG0004 Ammonia permease.
  
    0.684
tolA
Protein TolA; [M] COG3064 Membrane protein involved in colicin uptake.
  
     0.684
KB13_309
Conserved hypothetical protein.
 
     0.662
KB13_973
Sulfatase; [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
 
     0.551
KB13_618
[S] COG2960 Uncharacterized protein conserved in bacteria.
       0.526
KB13_1228
[ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.522
KB13_1164
[M] COG2980 Rare lipoprotein B.
  
     0.475
KB13_1275
Methyltransferase type 11; [R] COG4798 Predicted methyltransferase.
  
     0.475
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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