Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KB13_645Hypothetical protein. (60 aa)    
Predicted Functional Partners:
KB13_1105
Conserved hypothetical protein.
       0.634
KB13_949
ROK family protein; [KG] COG1940 Transcriptional regulator/sugar kinase.
       0.559
KB13_348
Methanol dehydrogenase regulatory protein; [R] COG0714 MoxR-like ATPases.
       0.510
KB13_84
Hypothetical protein.
       0.510
KB13_1214
Glutathione S-transfersae-related protein; [R] COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily.
       0.453
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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