STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType II Secretion System PilC; [NU] COG1459 Type II secretory pathway, component PulF. (410 aa)    
Predicted Functional Partners:
pilB
Type II Secretion System PilB; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
 0.998
KB13_1175
Bacterial type II and III secretion system protein; [U] COG4796 Type II secretory pathway, component HofQ; Belongs to the bacterial secretin family.
 
 
 
 0.967
pilT
Type II Secretion PilT; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 0.955
KB13_128
Fimbrial assembly protein.
   
 
 0.949
pilD
Type 4 prepilin peptidase PilD; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.947
KB13_810
Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.
  
  
 0.913
KB13_110
Hypothetical protein.
       0.773
KB13_1141
Hypothetical protein.
       0.773
KB13_981
Hypothetical protein.
       0.773
KB13_343
Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.
 
   
 0.764
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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