STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_683[T] COG5212 Low-affinity cAMP phosphodiesterase. (256 aa)    
Predicted Functional Partners:
cyaK
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
  
  0.909
KB13_1196
[M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
       0.773
KB13_1306
ErfK/YbiS/YcfS/YnhG; [S] COG3034 Uncharacterized protein conserved in bacteria.
  
     0.736
KB13_781
Hypothetical protein; [R] COG0457 FOG: TPR repeat; TPR repeat.
  
     0.735
KB13_274
[S] COG4254 Uncharacterized protein conserved in bacteria.
 
     0.602
KB13_207
[T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
  
  
  0.467
KB13_367
Hypothetical protein.
       0.456
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.