Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_696MxaD. (173 aa)    
Predicted Functional Partners:
KB13_1162
Hypothetical protein; [S] COG3391 Uncharacterized conserved protein; 40-residue yvtn beta-propeller repeat.
 
  
  0.909
KB13_1076
Von Willebrand factor, type A.
 
  
  0.890
KB13_322
Von Willebrand factor, type A; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
  
  0.890
KB13_38
Methanol dehydrogenase subunit 1; [S] COG1520 FOG: WD40-like repeat.
  
  
  0.877
KB13_377
Cytochrome c, class I.
  
  
  0.822
KB13_964
Putative Cytochrome c subfamily protein.
  
  
  0.822
KB13_1000
[R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
     0.790
KB13_888
Sulphur oxidation protein SoxZ; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.774
KB13_324
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.759
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.746
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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