STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_718[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (259 aa)    
Predicted Functional Partners:
KB13_1205
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
dppD
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
  
  0.979
KB13_1107
Extracellular solute-binding protein, family 5; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 0.964
KB13_285
Extracellular solute-binding protein, family 5; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 0.921
KB13_755
ErfK/YbiS/YcfS/YnhG; [S] COG1376 Uncharacterized protein conserved in bacteria.
       0.789
rumA
23S rRNA (uracil-5-)-methyltransferase; [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.774
KB13_34
Propable PolB; [L] COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB.
       0.773
KB13_713
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  
 
0.620
dsbB
Disulphide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
       0.584
cysM
Cysteine synthase B; [E] COG1171 Threonine dehydratase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.584
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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