KB13_751 protein (beta proteobacterium KB13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KB13_751

Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (240 aa)

Predicted Functional Partners:

KB13_1241

0.980

htpG

0.781

KB13_1093

0.777

dnaJ

0.761

KB13_1296

0.751

KB13_422

0.717

KB13_726

0.717

KB13_526

0.679

KB13_804

0.679

KB13_55

0.674

Your Current Organism:

beta proteobacterium KB13

NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KB13_1093	KB13_751	KB13_1093	KB13_751	Hypothetical protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.777
KB13_1093	dnaJ	KB13_1093	KB13_927	Hypothetical protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.737
KB13_1241	KB13_1296	KB13_1241	KB13_1296	[R] COG0457 FOG: TPR repeat.	Hypothetical protein.	0.689
KB13_1241	KB13_422	KB13_1241	KB13_422	[R] COG0457 FOG: TPR repeat.	[R] COG0666 FOG: Ankyrin repeat.	0.899
KB13_1241	KB13_526	KB13_1241	KB13_526	[R] COG0457 FOG: TPR repeat.	[R] COG0790 FOG: TPR repeat, SEL1 subfamily.	0.525
KB13_1241	KB13_55	KB13_1241	KB13_55	[R] COG0457 FOG: TPR repeat.	[BQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.	0.815
KB13_1241	KB13_726	KB13_1241	KB13_726	[R] COG0457 FOG: TPR repeat.	Ankyrin repeat protein.	0.864
KB13_1241	KB13_751	KB13_1241	KB13_751	[R] COG0457 FOG: TPR repeat.	Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.980
KB13_1241	KB13_804	KB13_1241	KB13_804	[R] COG0457 FOG: TPR repeat.	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase; [C] COG0633 Ferredoxin.	0.901
KB13_1241	dnaJ	KB13_1241	KB13_927	[R] COG0457 FOG: TPR repeat.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.871
KB13_1241	htpG	KB13_1241	KB13_427	[R] COG0457 FOG: TPR repeat.	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	0.864
KB13_1296	KB13_1241	KB13_1296	KB13_1241	Hypothetical protein.	[R] COG0457 FOG: TPR repeat.	0.689
KB13_1296	KB13_422	KB13_1296	KB13_422	Hypothetical protein.	[R] COG0666 FOG: Ankyrin repeat.	0.790
KB13_1296	KB13_55	KB13_1296	KB13_55	Hypothetical protein.	[BQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.	0.879
KB13_1296	KB13_726	KB13_1296	KB13_726	Hypothetical protein.	Ankyrin repeat protein.	0.790
KB13_1296	KB13_751	KB13_1296	KB13_751	Hypothetical protein.	Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.751
KB13_1296	dnaJ	KB13_1296	KB13_927	Hypothetical protein.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.762
KB13_1296	htpG	KB13_1296	KB13_427	Hypothetical protein.	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	0.482
KB13_422	KB13_1241	KB13_422	KB13_1241	[R] COG0666 FOG: Ankyrin repeat.	[R] COG0457 FOG: TPR repeat.	0.899
KB13_422	KB13_1296	KB13_422	KB13_1296	[R] COG0666 FOG: Ankyrin repeat.	Hypothetical protein.	0.790