STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppD[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily. (280 aa)    
Predicted Functional Partners:
KB13_713
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
  0.986
KB13_1205
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.985
KB13_718
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
  0.979
KB13_176
ABC transporter ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
 
     
0.899
KB13_1259
[V] COG0842 ABC-type multidrug transport system, permease component.
  
 0.882
KB13_556
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 
0.835
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
 
0.775
hisS
[J] COG0441 Threonyl-tRNA synthetase.
       0.773
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.686
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.685
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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