Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KB13_195 | rplM | KB13_195 | KB13_552 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| KB13_195 | rplS | KB13_195 | KB13_687 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| KB13_195 | rplU | KB13_195 | KB13_435 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| KB13_195 | rpmG | KB13_195 | KB13_482 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | [J] COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
| KB13_195 | rpmH | KB13_195 | KB13_782 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | [J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.998 |
| KB13_195 | rpsL | KB13_195 | KB13_1210 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
| KB13_195 | rpsN | KB13_195 | KB13_1215 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
| KB13_195 | rpsP | KB13_195 | KB13_398 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | [J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| KB13_195 | rpsT | KB13_195 | KB13_1122 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.999 |
| KB13_195 | rpsU | KB13_195 | KB13_686 | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | [J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.998 |
| rplM | KB13_195 | KB13_552 | KB13_195 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28. | 0.999 |
| rplM | rplS | KB13_552 | KB13_687 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplM | rplU | KB13_552 | KB13_435 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rpmG | KB13_552 | KB13_482 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | [J] COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
| rplM | rpmH | KB13_552 | KB13_782 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | [J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.998 |
| rplM | rpsL | KB13_552 | KB13_1210 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
| rplM | rpsN | KB13_552 | KB13_1215 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
| rplM | rpsP | KB13_552 | KB13_398 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | [J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| rplM | rpsT | KB13_552 | KB13_1122 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.999 |
| rplM | rpsU | KB13_552 | KB13_686 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | [J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.998 |
page 1 of 6