Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_800ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (305 aa)    
Predicted Functional Partners:
KB13_1259
[V] COG0842 ABC-type multidrug transport system, permease component.
 
 0.988
KB13_505
Conserved hypothetical protein; [N] COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
 
   
 0.957
KB13_530
Conserved hypothetical protein.
       0.752
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.598
KB13_1092
ABC-2; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
 
 0.573
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.539
KB13_1154
Hypothetical protein; [R] COG0457 FOG: TPR repeat; tetratricopeptide TPR_2.
       0.525
KB13_556
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
  0.489
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
  0.489
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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