STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_809MaoC domain protein; [I] COG2030 Acyl dehydratase. (353 aa)    
Predicted Functional Partners:
citE
[G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.961
KB13_622
[G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.950
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
  
 
 0.899
prpC
[C] COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
 0.825
oadA
[I] COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
     
 0.809
KB13_42
Putative HpcH/HpaI aldolase/citrate lyase family protein; [G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.800
KB13_885
long-chain-fatty-acid--CoA ligase, putative; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
 0.761
dhaL
[C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
   
 
 0.673
prpD
2-methylcitrate dehydratase; [R] COG2079 Uncharacterized protein involved in propionate catabolism.
       0.670
KB13_565
Oxidoreductase, zinc-binding; [Q] COG3321 Polyketide synthase modules and related proteins.
   
 0.625
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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