STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_987Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (144 aa)    
Predicted Functional Partners:
greA
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.791
KB13_19
Glycosyl transferase, family 39, putative; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
  
     0.755
KB13_950
[S] COG4390 Uncharacterized protein conserved in bacteria.
  
     0.701
KB13_171
[S] COG3737 Uncharacterized conserved protein.
  
     0.685
KB13_1249
[O] COG1333 ResB protein required for cytochrome c biosynthesis.
  
     0.675
carA
Carbamoyl-phosphate synthase, small subunit; [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II; Belongs to the CarA family.
       0.598
carB
Carbamoyl-phosphate synthase, large subunit; [C] COG1038 Pyruvate carboxylase; Belongs to the CarB family.
       0.598
KB13_1232
Cytochrome c assembly protein; [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
  
     0.551
KB13_1037
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.507
KB13_246
[S] COG4391 Uncharacterized protein conserved in bacteria.
  
     0.485
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.