Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDP99688.1 | YceD | KT99_13707 | KT99_00565 | Putative solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 0.754 |
| EDP99688.1 | rimM | KT99_13707 | KT99_03604 | Putative solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 16S rRNA-processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.426 |
| InfC | YceD | KT99_13307 | KT99_00565 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 0.738 |
| InfC | rimM | KT99_13307 | KT99_03604 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | 16S rRNA-processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.506 |
| InfC | rplM | KT99_13307 | KT99_08518 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.921 |
| InfC | rplU | KT99_13307 | KT99_20314 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.894 |
| InfC | rpmF | KT99_13307 | KT99_00066 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.881 |
| InfC | rpsB | KT99_13307 | KT99_05022 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.951 |
| InfC | rpsC | KT99_13307 | KT99_00389 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.941 |
| InfC | rpsF | KT99_13307 | KT99_08573 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.955 |
| InfC | rpsP | KT99_13307 | KT99_03599 | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.915 |
| YceD | EDP99688.1 | KT99_00565 | KT99_13707 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | Putative solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.754 |
| YceD | InfC | KT99_00565 | KT99_13307 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family. | 0.738 |
| YceD | rimM | KT99_00565 | KT99_03604 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 16S rRNA-processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.742 |
| YceD | rplM | KT99_00565 | KT99_08518 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.736 |
| YceD | rplU | KT99_00565 | KT99_20314 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.737 |
| YceD | rpmF | KT99_00565 | KT99_00066 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.812 |
| YceD | rpsB | KT99_00565 | KT99_05022 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.741 |
| YceD | rpsC | KT99_00565 | KT99_00389 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.792 |
| YceD | rpsF | KT99_00565 | KT99_08573 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.742 |
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