STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ01398.1Sensory box protein; COG2199 FOG: GGDEF domain. (1066 aa)    
Predicted Functional Partners:
EDQ01529.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
 
 
0.871
EDQ01277.1
Hypothetical protein.
  
 
 0.870
EDQ00410.1
Hypothetical protein.
  
 
 0.851
EDQ01450.1
Two-component hybrid sensor and regulator; COG0784 FOG: CheY-like receiver.
  
 
 0.847
EDQ00794.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
  
 
 0.842
EDQ02602.1
COG2199 FOG: GGDEF domain.
 
 
0.750
EDP99249.1
Sensory box protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.744
EDQ00289.1
MSHA biogenesis protein MshH; COG2199 FOG: GGDEF domain.
 
 
0.691
EDP99194.1
Sensory box/GGDEF/GAF/EAL domain protein; COG2200 FOG: EAL domain.
 
 
 
 0.682
EDQ02492.1
Sensory box protein; COG2202 FOG: PAS/PAC domain.
 
 
0.673
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.