STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ02333.1Sigma-54 dependent transcriptional regulator; COG3284 Transcriptional activator of acetoin/glycerol metabolism. (144 aa)    
Predicted Functional Partners:
EDQ02334.1
COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
 
     0.945
EDQ02335.1
Sigma-54 dependent transcriptional regulator; COG3284 Transcriptional activator of acetoin/glycerol metabolism.
     0.908
EDQ00567.1
Formate hydrogenlyase transcriptional activator, putative; COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
  
     0.768
EDQ02671.1
COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
  
     0.764
EDQ00698.1
Flagellar regulatory protein A; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
  
     0.762
LuxO-2
Repressor protein LuxO; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
  
     0.761
ntrC
Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
  
     0.758
TyrR
Transcriptional regulatory protein TyrR; COG3283 Transcriptional regulator of aromatic amino acids metabolism.
  
     0.754
NorR
Anaerobic nitric oxide reductase transcription regulator; COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
  
     0.750
EDP99398.1
Psp operon transcriptional activator; COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
  
     0.748
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.