Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDQ02334.1COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains. (68 aa)    
Predicted Functional Partners:
EDQ02333.1
Sigma-54 dependent transcriptional regulator; COG3284 Transcriptional activator of acetoin/glycerol metabolism.
 
     0.945
EDQ02335.1
Sigma-54 dependent transcriptional regulator; COG3284 Transcriptional activator of acetoin/glycerol metabolism.
 
     0.897
RpoN
DNA-directed RNA polymerase subunit N; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.787
EDP99398.1
Psp operon transcriptional activator; COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
  
     0.774
TyrR
Transcriptional regulatory protein TyrR; COG3283 Transcriptional regulator of aromatic amino acids metabolism.
  
     0.774
LuxO-2
Repressor protein LuxO; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
  
     0.774
EDQ02336.1
Sigma-54 dependent transcriptional regulator.
       0.565
YhdH
Zinc-binding alcohol dehydrogenase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.500
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.