Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDQ01736.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (259 aa)    
Predicted Functional Partners:
EDP98964.1
Hypothetical ABC transporter protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.749
EDQ00818.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.591
EDQ02300.1
COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
     0.590
EDQ01735.1
Hypothetical 4-hydroxybenzoyl-CoA thioesterase; COG0824 Predicted thioesterase.
       0.578
EDP99897.1
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.548
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.
  
    0.475
RhlE-2
ATP-dependent RNA helicase, DEAD box family protein; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
       0.422
EDQ02003.1
COG0643 Chemotaxis protein histidine kinase and related kinases.
  
     0.422
EDQ00304.1
MSHA pilin protein MshD; COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.420
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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