STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ01774.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EDQ01791.1
COG1292 Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.529
EDP99933.1
COG1292 Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.526
EDQ01792.1
COG1292 Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.473
PilU
COG5008 Tfp pilus assembly protein, ATPase PilU.
       0.428
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.