STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ00203.1Putative hydrolase; COG2366 Protein related to penicillin acylase. (443 aa)    
Predicted Functional Partners:
EDQ00201.1
Putative hydrolase; COG2366 Protein related to penicillin acylase.
     0.994
EDQ00204.1
Hydroxydechloroatrazine ethylaminohydrolase.
       0.709
EDQ00200.1
Hypothetical protein.
       0.488
EDQ01192.1
Hypothetical protein.
  
     0.469
EDQ01184.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.451
EDQ02002.1
COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.407
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.