STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ00795.1Hypothetical protein. (806 aa)    
Predicted Functional Partners:
EDQ02409.1
Hypothetical protein; COG2866 Predicted carboxypeptidase.
 
     0.763
EDQ00819.1
Probable aminopeptidase fused to fibronectin type 3 domain; COG2234 Predicted aminopeptidases.
  
     0.739
EDQ02752.1
Putative Xaa-Pro dipeptidase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.722
EDQ00820.1
Probable aminopeptidase fused to fibronectin type 3 domain.
  
     0.687
EDQ02002.1
COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.632
EDQ02012.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
   
 0.606
EDP99593.1
Hypothetical amidohydrolase; COG0823 Periplasmic component of the Tol biopolymer transport system.
  
     0.572
EDP99002.1
4-amino-4-deoxychorismate lyase; COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
      
 0.562
Gor
Glutathione reductase; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
      
 0.560
EDP99763.1
COG3034 Uncharacterized protein conserved in bacteria.
      
 0.555
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.