STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP99532.1COG3387 Glucoamylase and related glycosyl hydrolases. (62 aa)    
Predicted Functional Partners:
EDP99533.1
Transporter, putative; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.742
EDP99534.1
Transporter, putative; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.682
EDQ01187.1
Hypothetical protein.
  
     0.584
EDQ01388.1
Hypothetical ferric aerobactin receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.571
EDQ01115.1
COG3713 Outer membrane protein V.
  
     0.521
EDQ02791.1
Hypothetical protein.
  
     0.480
EDQ01816.1
COG0297 Glycogen synthase.
 
  
 0.431
EDP99038.1
COG3203 Outer membrane protein (porin).
  
     0.410
EDP99804.1
Invasin domain protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.409
EDQ00181.1
COG3203 Outer membrane protein (porin).
  
     0.400
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.