STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ02312.1COG5433 Transposase. (129 aa)    
Predicted Functional Partners:
EDQ02313.1
Hypothetical protein; COG5433 Transposase.
 
     0.871
EDP99546.1
COG5433 Transposase.
 
     0.744
EDQ01410.1
Transposase, putative; COG5433 Transposase.
  
     0.682
EDQ02314.1
Metal efflux system membrane component (silver efflux pump related) protein; COG3696 Putative silver efflux pump.
       0.639
EDQ02311.1
COG2199 FOG: GGDEF domain.
       0.551
EDQ01613.1
Hypothetical protein; COG5433 Transposase.
  
     0.523
CzcA
Cobalt-zinc-cadmium resistance protein czcA (Cation efflux system protein czcA); COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.518
EDQ00327.1
Hypothetical protein; COG5433 Transposase.
  
     0.509
EDQ00649.1
Hypothetical protein; COG5433 Transposase.
  
     0.504
EDP99029.1
Hypothetical protein; COG5433 Transposase.
  
     0.494
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.