Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDQ01280.1WARNINIG torE protein; COG4459 Periplasmic nitrate reductase system, NapE component. (56 aa)    
Predicted Functional Partners:
EDQ01279.1
Hypothetical protein.
       0.773
EDQ01281.1
Tetraheme cytochrome c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; Belongs to the TorC/TorY family.
  
  
 0.734
EDQ01282.1
trimethylamine-N-oxide reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.672
EDQ02553.1
Sensor histidine kinase.
   
    0.571
torD
Chaperone protein TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
     
 0.566
napD
NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
  
 0.493
EDQ02055.1
napD protein; COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase.
  
  
 0.493
EDQ01278.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.402
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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