Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDQ02067.1Transcriptional regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (221 aa)    
Predicted Functional Partners:
BarA
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
 
 0.931
EDQ01277.1
Hypothetical protein.
   
 
 0.906
EDQ01529.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
   
 
 0.904
EDP99210.1
Curli fiber protein CsgF, putative.
  
  
 0.891
EDP99209.1
CsgE-like protein.
  
  
 0.875
EDP99211.1
Curli production assembly/transport component CsgG precursor; COG1462 Uncharacterized protein involved in formation of curli polymers.
 
  
 0.820
EDP99970.1
Signal transduction histidine kinase.
   
 
 0.782
EDQ00410.1
Hypothetical protein.
  
 
 0.616
EDP99690.1
Nitrate/nitrite sensor protein NarQ; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
 
 
 0.544
EDQ01450.1
Two-component hybrid sensor and regulator; COG0784 FOG: CheY-like receiver.
  
 
 0.535
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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