STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ02068.1COG2374 Predicted extracellular nuclease. (886 aa)    
Predicted Functional Partners:
EDP99242.1
COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
   
 0.734
EDP99094.1
COG3291 FOG: PKD repeat.
 
     0.437
CyaB
COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.427
EDP99021.1
Collagenase family protein; COG0753 Catalase.
  
     0.415
EDQ02069.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.405
EDQ01871.1
Putative transmembrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.403
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.