STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ00463.1COG3000 Sterol desaturase. (266 aa)    
Predicted Functional Partners:
EDQ00462.1
Hypothetical protein.
 
   
 0.663
EDQ00531.1
Oxidoreductase; COG3751 Predicted proline hydroxylase.
  
  
 0.598
UbiF
Oxidoreductase, FAD-binding protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 
 0.521
UbiH
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 
 0.521
VisC
Oxidoreductase, FAD-binding, UbiH/Coq6 family protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 
 0.521
EDP98844.1
YrhL; COG1835 Predicted acyltransferases.
 
    0.480
EDQ02684.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
 
 0.477
EDQ00213.1
Omega-3 polyunsaturated fatty acid synthase PfaA; COG3321 Polyketide synthase modules and related proteins.
  
  
 0.472
EDQ00211.1
Omega-3 polyunsaturated fatty acid synthase PfaC; COG3321 Polyketide synthase modules and related proteins; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  
 0.402
EDP99249.1
Sensory box protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
    0.402
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.