Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFG13590.1 | SFG13622.1 | SAMN04488020_101274 | SAMN04488020_101275 | Hypothetical protein. | Di-and tricarboxylate transporter. | 0.464 |
SFG13590.1 | SFG82608.1 | SAMN04488020_101274 | SAMN04488020_104113 | Hypothetical protein. | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | 0.445 |
SFG13590.1 | SFH54319.1 | SAMN04488020_101274 | SAMN04488020_1229 | Hypothetical protein. | Hypothetical protein. | 0.563 |
SFG13590.1 | fliL | SAMN04488020_101274 | SAMN04488020_105128 | Hypothetical protein. | Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.445 |
SFG13590.1 | gltB_1 | SAMN04488020_101274 | SAMN04488020_105177 | Hypothetical protein. | Glutamate synthase (NADPH) large subunit. | 0.470 |
SFG13590.1 | guaA_1 | SAMN04488020_101274 | SAMN04488020_10132 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.794 |
SFG13590.1 | guaB | SAMN04488020_101274 | SAMN04488020_108178 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.450 |
SFG13590.1 | pncC_2 | SAMN04488020_101274 | SAMN04488020_106214 | Hypothetical protein. | Molybdenum cofactor synthesis domain-containing protein. | 0.411 |
SFG13590.1 | ribD | SAMN04488020_101274 | SAMN04488020_101331 | Hypothetical protein. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.435 |
SFG13590.1 | rnpA | SAMN04488020_101274 | SAMN04488020_107198 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.563 |
SFG13622.1 | SFG13590.1 | SAMN04488020_101275 | SAMN04488020_101274 | Di-and tricarboxylate transporter. | Hypothetical protein. | 0.464 |
SFG82608.1 | SFG13590.1 | SAMN04488020_104113 | SAMN04488020_101274 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | Hypothetical protein. | 0.445 |
SFH54319.1 | SFG13590.1 | SAMN04488020_1229 | SAMN04488020_101274 | Hypothetical protein. | Hypothetical protein. | 0.563 |
fliL | SFG13590.1 | SAMN04488020_105128 | SAMN04488020_101274 | Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Hypothetical protein. | 0.445 |
gltB_1 | SFG13590.1 | SAMN04488020_105177 | SAMN04488020_101274 | Glutamate synthase (NADPH) large subunit. | Hypothetical protein. | 0.470 |
gltB_1 | guaA_1 | SAMN04488020_105177 | SAMN04488020_10132 | Glutamate synthase (NADPH) large subunit. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.950 |
gltB_1 | guaB | SAMN04488020_105177 | SAMN04488020_108178 | Glutamate synthase (NADPH) large subunit. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.973 |
gltB_1 | ribD | SAMN04488020_105177 | SAMN04488020_101331 | Glutamate synthase (NADPH) large subunit. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.473 |
guaA_1 | SFG13590.1 | SAMN04488020_10132 | SAMN04488020_101274 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Hypothetical protein. | 0.794 |
guaA_1 | gltB_1 | SAMN04488020_10132 | SAMN04488020_105177 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Glutamate synthase (NADPH) large subunit. | 0.950 |
page 1 of 2