STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfCPAS domain S-box-containing protein. (837 aa)    
Predicted Functional Partners:
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB.
 0.999
bphP_1
Hypothetical protein.
0.999
gmr_2
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.999
tcrX
Response regulator receiver domain-containing protein.
 
 0.999
cheB3
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 0.999
arcB
Hypothetical protein.
 
0.999
ompR
Two-component system, OmpR family, phosphate regulon response regulator OmpR.
 0.999
gmr_3
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.999
tctD
Two-component system, OmpR family, response regulator TctD.
 0.999
SFH12473.1
PAS domain S-box-containing protein.
 
0.999
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.