STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfH_1DNA-binding transcriptional regulator, GntR family. (238 aa)    
Predicted Functional Partners:
ydfH_4
DNA-binding transcriptional regulator, GntR family.
  
     0.774
csiR_2
GntR family transcriptional regulator, vanillate catabolism transcriptional regulator.
  
     0.766
lldR_2
DNA-binding transcriptional regulator, GntR family.
  
     0.764
lutR_3
DNA-binding transcriptional regulator, FadR family.
  
     0.614
lutR_2
DNA-binding transcriptional regulator, FadR family.
  
    0.573
dapA_2
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
       0.565
pdhR
DNA-binding transcriptional regulator, FadR family.
  
    0.540
SFG38956.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.527
lutR_4
DNA-binding transcriptional regulator, FadR family.
  
    0.500
lldR_1
DNA-binding transcriptional regulator, FadR family.
  
    0.498
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.