STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaM_1TRAP-type C4-dicarboxylate transport system, small permease component. (163 aa)    
Predicted Functional Partners:
siaT_6
C4-dicarboxylate transporter, DctM subunit.
 
  0.949
yiaO_2
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.923
SFG62585.1
Hypothetical protein.
 
     0.846
allR
Transcriptional regulator, IclR family.
 
     0.795
lcfB_2
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.794
fadA_1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.656
yiaO_4
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.520
siaT_2
TRAP transporter, DctM subunit.
  
  0.474
SFH41421.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.408
ggt
Gamma-glutamyltranspeptidase / glutathione hydrolase.
  
     0.407
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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