STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjSPredicted dehydrogenase. (344 aa)    
Predicted Functional Partners:
SFG71019.1
Threonine dehydrogenase.
 
  0.980
rfbE
CDP-paratose 2-epimerase.
 
 
  0.881
mshA_2
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.875
SFG70815.1
Spore maturation protein CgeB.
 
     0.873
SFG70853.1
Spore maturation protein CgeB.
 
     0.873
SFG70880.1
Spore maturation protein CgeB.
 
     0.873
wbiB
dTDP-L-rhamnose 4-epimerase.
 
 
  0.873
cmoB
tRNA (mo5U34)-methyltransferase.
 
     0.864
iolE_1
2-keto-myo-inositol dehydratase.
 
 
  0.682
iolE_3
Inosose dehydratase.
 
 
  0.682
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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