STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugC_2iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (359 aa)    
Predicted Functional Partners:
ydcV_2
Spermidine/putrescine transport system permease protein.
 
 0.867
ydcV_3
Putative spermidine/putrescine transport system permease protein.
 
 0.854
cysW_2
iron(III) transport system permease protein.
 
 0.852
potB
Spermidine/putrescine transport system permease protein.
 0.843
potH_1
Putrescine transport system permease protein.
 0.823
idiA
iron(III) transport system substrate-binding protein.
 
 0.817
ydcV_1
Putrescine transport system permease protein.
 
 0.812
SFG69996.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.810
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
   
   0.799
potH_2
Putative spermidine/putrescine transport system permease protein.
 
 0.797
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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