STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhRDNA-binding transcriptional regulator, FadR family. (242 aa)    
Predicted Functional Partners:
ytfT
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.808
yjfF
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.805
rbsA_7
Simple sugar transport system ATP-binding protein.
 
     0.775
lutR_4
DNA-binding transcriptional regulator, FadR family.
  
     0.759
lutR_1
Transcriptional regulator, GntR family.
  
     0.754
ydfH_4
DNA-binding transcriptional regulator, GntR family.
  
    0.736
lldR_3
Transcriptional regulator, GntR family.
  
     0.697
paaE
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.666
mcbR_3
DNA-binding transcriptional regulator, GntR family.
  
    0.665
ytfQ
Simple sugar transport system substrate-binding protein.
 
     0.654
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.