STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pulDPilus assembly protein CpaC; Belongs to the bacterial secretin family. (464 aa)    
Predicted Functional Partners:
SFH15168.1
Pilus assembly protein CpaB.
 
  
 0.989
minD_2
Pilus assembly protein CpaE.
 
  
 0.974
SFH15003.1
Tight adherence protein C.
 
  
 0.962
SFH15033.1
Type II secretion system protein F (GspF).
 
  
 0.960
SFH15061.1
Pilus assembly protein CpaF.
  
 0.953
SFH15114.1
OmpA family protein.
 
    0.946
SFH14912.1
Prepilin peptidase CpaA.
 
  
 0.911
ycf3
Flp pilus assembly protein TadD, contains TPR repeats.
 
  
 0.902
SFH14884.1
Hypothetical protein.
 
     0.852
SFH15196.1
Hypothetical protein.
 
  
 0.850
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.