STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH20312.1General secretion pathway protein K. (307 aa)    
Predicted Functional Partners:
SFH20162.1
General secretion pathway protein J.
  
 
 0.996
SFH20195.1
General secretion pathway protein I.
  
 
 0.988
xcpT
General secretion pathway protein G.
  
 
 0.963
xpsE
Type II secretion system protein E (GspE).
  
  
 0.863
epsF_2
General secretion pathway protein F.
     
 0.858
SFH20367.1
Type II secretion system (T2SS), protein M subtype b.
     
 0.807
SFH20395.1
Tfp pilus assembly protein PilN.
     
 0.802
SFH20223.1
Type II transport protein GspH.
       0.796
SFH20339.1
Hypothetical protein.
       0.773
xpsD
Type II secretion system protein D (GspD).
     
 0.422
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.