STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH28341.1Type IV secretion system protein. (391 aa)    
Predicted Functional Partners:
SFH28373.1
Type IV secretion system protein VirB4.
 
   
 0.953
SFH28322.1
Type IV secretion system protein VirB5.
 
    0.951
SFH28287.1
Type IV secretion system protein VirB9.
 
   
 0.948
SFH28306.1
Type IV secretion system protein VirB8.
 
   
 0.948
SFH28206.1
Type IV secretion system protein VirB6.
 
   
 0.948
SFH28265.1
Type IV secretion system protein VirB10.
 
   
 0.947
SFH28250.1
Type IV secretion system protein VirB11.
 
    0.916
SFH28411.1
TrbC/VIRB2 family protein.
 
   
 0.907
SFH28184.1
Type IV secretion system protein VirD4.
 
   
 0.780
SFH28165.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.776
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.