Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFG18264.1 | SFH27951.1 | SAMN04488020_101428 | SAMN04488020_10985 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | DEAD/DEAH box helicase. | 0.921 |
SFG18264.1 | deaD | SAMN04488020_101428 | SAMN04488020_103242 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.934 |
SFG18264.1 | fusA | SAMN04488020_101428 | SAMN04488020_11282 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.931 |
SFG18264.1 | hrpB | SAMN04488020_101428 | SAMN04488020_102389 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent helicase HrpB. | 0.922 |
SFG18264.1 | ppiB | SAMN04488020_101428 | SAMN04488020_101427 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.918 |
SFG18264.1 | rhlE_1 | SAMN04488020_101428 | SAMN04488020_103153 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent RNA helicase RhlE. | 0.947 |
SFG18264.1 | rhlE_2 | SAMN04488020_101428 | SAMN04488020_110137 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.948 |
SFH16037.1 | SFH27951.1 | SAMN04488020_107159 | SAMN04488020_10985 | Restriction endonuclease BglII. | DEAD/DEAH box helicase. | 0.618 |
SFH27951.1 | SFG18264.1 | SAMN04488020_10985 | SAMN04488020_101428 | DEAD/DEAH box helicase. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.921 |
SFH27951.1 | SFH16037.1 | SAMN04488020_10985 | SAMN04488020_107159 | DEAD/DEAH box helicase. | Restriction endonuclease BglII. | 0.618 |
SFH27951.1 | SFH27973.1 | SAMN04488020_10985 | SAMN04488020_10986 | DEAD/DEAH box helicase. | Hypothetical protein. | 0.796 |
SFH27951.1 | deaD | SAMN04488020_10985 | SAMN04488020_103242 | DEAD/DEAH box helicase. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.856 |
SFH27951.1 | fusA | SAMN04488020_10985 | SAMN04488020_11282 | DEAD/DEAH box helicase. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.996 |
SFH27951.1 | hemA | SAMN04488020_10985 | SAMN04488020_101421 | DEAD/DEAH box helicase. | 5-aminolevulinate synthase. | 0.711 |
SFH27951.1 | hrpB | SAMN04488020_10985 | SAMN04488020_102389 | DEAD/DEAH box helicase. | ATP-dependent helicase HrpB. | 0.960 |
SFH27951.1 | ppiB | SAMN04488020_10985 | SAMN04488020_101427 | DEAD/DEAH box helicase. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.921 |
SFH27951.1 | rhlE_1 | SAMN04488020_10985 | SAMN04488020_103153 | DEAD/DEAH box helicase. | ATP-dependent RNA helicase RhlE. | 0.856 |
SFH27951.1 | rhlE_2 | SAMN04488020_10985 | SAMN04488020_110137 | DEAD/DEAH box helicase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.856 |
SFH27973.1 | SFH27951.1 | SAMN04488020_10986 | SAMN04488020_10985 | Hypothetical protein. | DEAD/DEAH box helicase. | 0.796 |
deaD | SFG18264.1 | SAMN04488020_103242 | SAMN04488020_101428 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.934 |
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