STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desOmega-6 fatty acid desaturase (delta-12 desaturase). (351 aa)    
Predicted Functional Partners:
paaE
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.899
mscS_2
Small-conductance mechanosensitive channel.
       0.773
SFH32400.1
Hypothetical protein.
       0.768
fpr
ferredoxin--NADP+ reductase.
  
 
 0.467
SFH13687.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
 
 0.452
SFG66459.1
Squalene-associated FAD-dependent desaturase.
     
 0.446
SFG99382.1
Ferredoxin, 2Fe-2S.
  
 
 0.421
crtP
Phytoene desaturase.
    
 0.414
carC
Phytoene desaturase.
    
 0.414
SFG87782.1
Protein of unknown function.
   
    0.412
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.