STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH33666.1Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family. (515 aa)    
Predicted Functional Partners:
tmd
Dimethylamine/trimethylamine dehydrogenase.
 
  
  0.901
metH
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.900
SFG11672.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.805
SFH23839.1
Protein of unknown function.
 
     0.805
SFG11553.1
Virulence factor.
 
     0.797
acsE
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.793
SFH41576.1
Methylenetetrahydrofolate reductase (NADPH).
 
    0.773
yitJ
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
     0.732
SFG16232.1
Hypothetical protein.
  
     0.693
immR
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.679
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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