STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykuD_2Lipoprotein-anchoring transpeptidase ErfK/SrfK. (235 aa)    
Predicted Functional Partners:
nudF
Nudix-type nucleoside diphosphatase, YffH/AdpP family.
       0.538
SFH37337.1
Hypothetical protein.
       0.538
SFH37358.1
Hypothetical protein.
       0.538
SFH40108.1
Transglycosylase SLT domain-containing protein.
  
     0.496
ykuD_1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.488
SFH14562.1
Hypothetical protein.
  
     0.435
cysK
Cysteine synthase A.
       0.433
SFG21763.1
Invasion protein IalB, involved in pathogenesis.
  
     0.421
mepA_1
Penicillin-insensitive murein endopeptidase.
  
     0.415
SFH05278.1
L,D-transpeptidase catalytic domain.
 
  
 0.414
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.