STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH41377.1DNA-binding transcriptional regulator, MarR family. (158 aa)    
Predicted Functional Partners:
SFH41399.1
Hypothetical protein.
 
     0.907
SFH41421.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.859
lcfB_4
feruloyl-CoA synthase.
 
     0.852
paaF_2
Vanillin synthase /trans-feruloyl-CoA hydratase.
 
    0.829
gcvT_3
vanillate/3-O-methylgallate O-demethylase; Belongs to the GcvT family.
 
     0.731
SFH41441.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.699
SFH41635.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.697
fabG_5
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.659
SFH27452.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
    0.595
dctP_3
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.589
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.