STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rob_2Transcriptional regulator, AraC family. (304 aa)    
Predicted Functional Partners:
virF
AraC-type DNA-binding protein.
  
   0.782
SFH45607.1
Transcriptional regulator, TetR family.
 
     0.781
rob_3
Transcriptional regulator, AraC family.
 
    
0.779
gltB_1
Glutamate synthase (NADPH) large subunit.
    
  0.764
btr
AraC family transcriptional regulator, transcriptional activator of pobA.
  
   0.733
exsA
AraC family transcriptional regulator, transcriptional activator of pobA.
  
     0.658
SFH45460.1
Transcriptional regulator, TetR family.
  
     0.607
araC_1
AraC-type DNA-binding protein.
  
     0.517
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.448
pchR
AraC-type DNA-binding protein.
  
     0.440
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.