STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfbAO-antigen export system permease protein RfbA. (258 aa)    
Predicted Functional Partners:
rfbE
O-antigen export system ATP-binding protein RfbE.
 
 0.999
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
     
 0.925
RF_0543
Two-domain glycosyltransferase; Belongs to the glycosyltransferase 2 family.
 
  
 0.902
manC
Mannose-1-phosphate guanylyltransferase.
  
  
 0.852
znuA
Zinc/manganese ABC transporter substrate binding protein.
      
 0.734
trxA
Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity).
     
 0.731
RF_0228
Unknown.
 
  
 0.677
nrdB
Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
   
    0.625
lgtD
Glycosyltransferase.
 
  
 0.577
kpsF
KpsF protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
    0.550
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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